Archive for the Running Category

Bangalore workshop [ಬೆಂಗಳೂರು ಕಾರ್ಯಾಗಾರ]

Posted in pictures, R, Running, Statistics, Travel, University life, Wines with tags , , , , , , on July 31, 2014 by xi'an

mathdeptSecond day at the Indo-French Centre for Applied Mathematics and the workshop. Maybe not the most exciting day in terms of talks (as I missed the first two plenary sessions by (a) oversleeping and (b) running across the campus!). However I had a neat talk with another conference participant that led to [what I think are] interesting questions… (And a very good meal in a local restaurant as the guest house had not booked me for dinner!)

To wit: given a target like

\lambda \exp(-\lambda) \prod_{i=1}^n \dfrac{1-\exp(-\lambda y_i)}{\lambda}\quad (*)

the simulation of λ can be demarginalised into the simulation of

\pi (\lambda,\mathbf{z})\propto \lambda \exp(-\lambda) \prod_{i=1}^n \exp(-\lambda z_i) \mathbb{I}(z_i\le y_i)

where z is a latent (and artificial) variable. This means a Gibbs sampler simulating λ given z and z given λ can produce an outcome from the target (*). Interestingly, another completion is to consider that the zi‘s are U(0,yi) and to see the quantity

\pi(\lambda,\mathbf{z}) \propto \lambda \exp(-\lambda) \prod_{i=1}^n \exp(-\lambda z_i) \mathbb{I}(z_i\le y_i)

as an unbiased estimator of the target. What’s quite intriguing is that the quantity remains the same but with different motivations: (a) demarginalisation versus unbiasedness and (b) zi ∼ Exp(λ) versus zi ∼ U(0,yi). The stationary is the same, as shown by the graph below, the core distributions are [formally] the same, … but the reasoning deeply differs.


Obviously, since unbiased estimators of the likelihood can be justified by auxiliary variable arguments, this is not in fine a big surprise. Still, I had not thought of the analogy between demarginalisation and unbiased likelihood estimation previously. Continue reading

Bangalore workshop [ಬೆಂಗಳೂರು ಕಾರ್ಯಾಗಾರ]

Posted in pictures, Running, Statistics, Travel, University life, Wines with tags , , , , , on July 30, 2014 by xi'an

iiscFirst day at the Indo-French Centre for Applied Mathematics and the get-together (or speed-dating!) workshop. The campus of the Indian Institute of Science of Bangalore where we all stay is very pleasant with plenty of greenery in the middle of a very busy city. Plus, being at about 1000m means the temperature remains tolerable for me, to the point of letting me run in the morning.Plus, staying in a guest house in the campus also means genuine and enjoyable south Indian food.

The workshop is a mix of statisticians and of mathematicians of neurosciences, from both India and France, and we are few enough to have a lot of opportunities for discussion and potential joint projects. I gave the first talk this morning (hence a fairly short run!) on ABC model choice with random forests and, given the mixed audience, may have launched too quickly into the technicalities of the forests. Even though I think I kept the statisticians on-board for most of the talk. While the mathematical biology talks mostly went over my head (esp. when I could not resist dozing!), I enjoyed the presentation of Francis Bach of a fast stochastic gradient algorithm, where the stochastic average is only updated one term at a time, for apparently much faster convergence results. This is related with a joint work with Éric Moulines that both Éric and Francis presented in the past month. And makes me wonder at the intuition behind the major speed-up. Shrinkage to the mean maybe?

art brut

Posted in pictures, Running, Travel with tags , , , , , , on July 26, 2014 by xi'an


Cancun, ISBA 2014 [½ day #2]

Posted in pictures, Running, Statistics, Travel, University life with tags , , , , , , , , , , , , on July 19, 2014 by xi'an


Half-day #2 indeed at ISBA 2014, as the Wednesday afternoon kept to the Valencia tradition of free time, and potential cultural excursions, so there were only talks in the morning. And still the core poster session at (late) night. In which my student Kaniav Kamari presented a poster on a current project we are running with Kerrie Mengersen and Judith Rousseau on the replacement of the standard Bayesian testing setting with a mixture representation. Being half-asleep by the time the session started, I did not stay long enough to collect data on the reactions to this proposal, but the paper should be arXived pretty soon. And Kate Lee gave a poster on our importance sampler for evidence approximation in mixtures (soon to be revised!). There was also an interesting poster about reparameterisation towards higher efficiency of MCMC algorithms, intersecting with my long-going interest in the matter, although I cannot find a mention of it in the abstracts. And I had a nice talk with Eduardo Gutierrez-Pena about infering on credible intervals through loss functions. There were also a couple of appealing posters on g-priors. Except I was sleepwalking by the time I spotted them… (My conference sleeping pattern does not work that well for ISBA meetings! Thankfully, both next editions will be in Europe.)

Great talk by Steve McEachern that linked to our ABC work on Bayesian model choice with insufficient statistics, arguing towards robustification of Bayesian inference by only using summary statistics. Despite this being “against the hubris of Bayes”… Obviously, the talk just gave a flavour of Steve’s perspective on that topic and I hope I can read more to see how we agree (or not!) on this notion of using insufficient summaries to conduct inference rather than trying to model “the whole world”, given the mistrust we must preserve about models and likelihoods. And another great talk by Ioanna Manolopoulou on another of my pet topics, capture-recapture, although she phrased it as a partly identified model (as in Kline’s talk yesterday). This related with capture-recapture in that when estimating a capture-recapture model with covariates, sampling and inference are biased as well. I appreciated particularly the use of BART to analyse the bias in the modelling. And the talk provided a nice counterpoint to the rather pessimistic approach of Kline’s.

Terrific plenary sessions as well, from Wilke’s spatio-temporal models (in the spirit of his superb book with Noel Cressie) to Igor Prunster’s great entry on Gibbs process priors. With the highly significant conclusion that those processes are best suited for (in the sense that they are only consistent for) discrete support distributions. Alternatives are to be used for continuous support distributions, the special case of a Dirichlet prior constituting a sort of unique counter-example. Quite an inspiring talk (even though I had a few micro-naps throughout it!).

I shared my afternoon free time between discussing the next O’Bayes meeting (2015 is getting very close!) with friends from the Objective Bayes section, getting a quick look at the Museo Maya de Cancún (terrific building!), and getting some work done (thanks to the lack of wireless…)

Cancun sunrise

Posted in pictures, Running, Travel with tags , , , , on July 15, 2014 by xi'an



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