**T**his week, I decided not to report on the paper read at the Reading Classics student seminar, as it did not work out well-enough. The paper was the “Regression models and life-table” published in 1972 by David Cox… A classic if any! Indeed, I do not think posting a severe criticism of the presentation or the presentation itself would be of much use to anyone. It is rather sad as (a) the student clearly put some effort in the presentation, including a reproduction of an R execution, and (b) this was an entry on semi-parametrics, Kaplan-Meyer, truncated longitudinal data, and more, that could have benefited the class immensely. Alas, the talk did not take any distance from the paper, did not exploit the following discussion, and exceeded by far the allocated time, without delivering a comprehensible message. It is a complex paper with concise explanations, granted, but there were ways to find easier introductions to its contents in the more recent literature… It is possible that a second student takes over and presents her analysis of the paper next January. Unless she got so scared with this presentation that she will switch to another paper… *[Season wishes to Classics Readers!]*

## Archive for Master program

## [not] reading classics (#7)

Posted in Books, Kids, Statistics, University life with tags classics, Kaplan-Meier estimator, Master program, seminar, Université Paris Dauphine on December 15, 2013 by xi'an## reading classics (#4,5,6)

Posted in Books, Kids, Statistics, University life with tags AIC, Akaike's criterion, ARMA models, Benjamini, classics, FAR, generalised linear models, GLMs, Hochberg, John Nelder, Master program, multiple comparisons, seminar, Université Paris Dauphine, Valencia conferences on December 9, 2013 by xi'an**T**his week, thanks to a lack of clear instructions (from me) to my students in the Reading Classics student seminar, four students showed up with a presentation! Since I had planned for two teaching blocks, three of them managed to fit within the three hours, while the last one nicely accepted to wait till next week to present a paper by David Cox…

**T**he first paper discussed therein was A new look at the statistical model identification, written in 1974 by Hirotugu Akaike. And presenting the AIC criterion. My student Rozan asked to give the presentation in French as he struggled with English, but it was still a challenge for him and he ended up being too close to the paper to provide a proper perspective on why AIC is written the way it is and why it is (potentially) relevant for model selection. And why it is not such a definitive answer to the model selection problem. This is not the simplest paper in the list, to be sure, but some intuition could have been built from the linear model, rather than producing the case of an ARMA(p,q) model without much explanation. (I actually wonder why the penalty for this model is (p+q)/T, rather than (p+q+1)/T for the additional variance parameter.) Or simulation ran on the performances of AIC versus other xIC’s…

**T**he second paper was another classic, the original GLM paper by John Nelder and his coauthor Wedderburn, published in 1972 in Series B. A slightly easier paper, in that the notion of a generalised linear model is presented therein, with mathematical properties linking the (conditional) mean of the observation with the parameters and several examples that could be discussed. Plus having the book as a backup. My student Ysé did a reasonable job in presenting the concepts, but she would have benefited from this extra-week in including properly the computations she ran in R around the *glm()* function… (The definition of the deviance was somehow deficient, although this led to a small discussion during the class as to how the analysis of deviance was extending the then flourishing analysis of variance.) In the generic definition of the generalised linear models, I was also reminded of the

generality of the nuisance parameter modelling, which made the part of interest appear as an exponential shift on the original (nuisance) density.

**T**he third paper, presented by Bong, was yet another classic, namely the FDR paper, Controlling the false discovery rate, of Benjamini and Hochberg in Series B (which was recently promoted to the should-have-been-a-Read-Paper category by the RSS Research Committee and discussed at the Annual RSS Conference in Edinburgh four years ago, as well as published in Series B). This 2010 discussion would actually have been a good start to discuss the paper in class, but Bong was not aware of it and mentioned earlier papers extending the 1995 classic. She gave a decent presentation of the problem and of the solution of Benjamini and Hochberg but I wonder how much of the novelty of the concept the class grasped. (I presume everyone was getting tired by then as I was the only one asking questions.) The slides somewhat made it look too much like a simulation experiment… (Unsurprisingly, the presentation did not include any Bayesian perspective on the approach, even though they are quite natural and emerged very quickly once the paper was published. I remember for instance the Valencia 7 meeting in Teneriffe where Larry Wasserman discussed about the Bayesian-frequentist agreement in multiple testing.)

## reading classics (#3)

Posted in Books, Kids, Statistics, University life with tags bag of little bootstraps, big data, classics, massive datasets, Master program, seminar, Université Paris Dauphine on November 29, 2013 by xi'an**T**his week at the Reading Classics student seminar, Thomas Ounas presented a paper, *Statistical inference on massive datasets*, written by Li, Lin, and Li, a paper out of The List. (This paper was recently published as *Applied Stochastic Models in Business and Industry*, 29, 399-409..) I accepted this unorthodox proposal as (a) it was unusual, i.e., this was the very first time a student made this request, and (b) the topic of large datasets and their statistical processing definitely was interesting even though the authors of the paper were unknown to me. The presentation by Thomas was very power-pointish *(or power[-point]ful!)*, with plenty of dazzling transition effects… Even including (a) a Python software replicating the method and (b) a nice little video on internet data transfer protocols. And on a Linux machine! Hence the experiment was worth the try! Even though the paper is a rather unlikely candidate for the list of classics… (And the rendering in static power point no so impressive. Hence a video version available as well…)

**T**he solution adopted by the authors of the paper is one of breaking a massive dataset into blocks so that each fits into the computer(s) memory and of computing a separate estimate for each block. Those estimates are then averaged (and standard-deviationed) without a clear assessment of the impact of this multi-tiered handling of the data. Thomas then built a software to illustrate this approach, with mean and variance and quantiles and densities as quantities of interest. Definitely original! The proposal itself sounds rather basic from a statistical viewpoint: for instance, evaluating the loss in information due to using this blocking procedure requires repeated sampling, which is unrealistic. Or using solely the inter-variance estimates which seems to be missing the intra-variability. Hence to be overly optimistic. Further, strictly speaking, the method does not asymptotically apply to biased estimators, hence neither to Bayes estimators (nor to density estimators). Convergence results are thus somehow formal, in that the asymptotics cannot apply to a finite memory computer. In practice, the difficulty of the splitting technique is rather in breaking the data into blocks since Big Data is rarely made of iid observations. Think of amazon data, for instance. A question actually asked by the class. The method of Li et al. should also include some boostrapping connection. E.g., to Michael’s bag of little bootstraps.

## Dear Sir, I am unable to understand…

Posted in Statistics, University life with tags Bayesian statistics, Master program, MCMC algorithms, Metropolis-Hastings algorithms, mixtures, prior, random numbers on January 30, 2013 by xi'an**H**ere is an email I received a few days ago, similar to many other emails I/we receive on a regular basis:

I am working on Markov Chain Monte Carlo methods as part of my Masters project. I have to estimate mean, variance from a Gaussian mixture using metropolis method. I came across your paper ‘Bayesian Modelling and Inference on Mixtures of Distributions’. I am unable to understand how to obtain the new sample for mean, variance etc… I am using uniform distribution as proposal distribution. Should it be random numbers for the proposal distribution.

I have been working and trying to understand this for a long time. I would be grateful for any help.

While I felt sorry for the Master student, I consider it is the responsibility of his/her advisor to give her/him the proper directions for understanding the paper. (Given the contents of the email, it sounds as if the student would require proper training in both Bayesian statistics [uniform priors on unbounded parameters?] and simulation [the question about random numbers does not make sense]…) This is what I replied to the student, hopefully in a positive tone.