Archive for Bayesian computation

MCMskv, Lenzerheide, 4-7 Jan., 2016 [news #5]

Posted in Kids, Mountains, pictures, Travel, University life with tags , , , , , , , , , , , , , on November 18, 2015 by xi'an

moonriseWhile the deadline for Breaking News! submission is now over, with close to 20 submissions!, there is a new opening for cheaper lodging: The CUBE hotel in Savognin (20km away) has an offer at 110 CHF per person and per night, including breakfast, dinner, and skipass in a room for 3 people (or more). Be sure to mention MCMski in the subject of your email. As mentioned in the previous post, there are other opportunities in nearby villages, for instance Tiefencastel, 11km away with a 19mn bus connection, or Chur, 18km away with a slower 39mn bus connection, but with a very wide range of offers.

MCMskv, Lenzerheide, 4-7 Jan., 2016 [(breaking) news #4]

Posted in Kids, Mountains, pictures, Travel, University life with tags , , , , , , , , , , , , , on November 6, 2015 by xi'an

moonriseAs the deadline draws near, a week from now!, I want to remind participants to the next MCMSki conference in Lenzerheide that they can candidate to the Breaking News! session:

This edition of the MCMSki conference will include a Breaking News! session, covering the latest developments in the field, latest enough to be missed by the scientific committee when building the program. To be considered for this special session, please indicate you wish to compete for this distinction when submitting your poster. The deadline for submission is November 15, 2015. The selection will be made by the scientific committee and the time allocated to each talk will depend on the number of selected talks. Selected presenters will be notified by December 02, 2015, and they are expected to participate in the poster session to ensure maximal dissemination of their breaking news.

And since I got personal enquiries yesterday, the number of talks during that session will be limited to have real talks and not flash oral presentations of incoming posters. Unless the scientific committee cannot make its mind on which news to break..!

MCMskv, Lenzerheide, 4-7 Jan., 2016 on a shoestring [news #3]

Posted in Kids, Mountains, pictures, Travel, University life with tags , , , , , , , , , , , , , on September 16, 2015 by xi'an

moonriseAs the ‘Og received several comments about the accommodation costs for BayesComp MCMski V, which are indeed rather high if one only follows the suggestions on the lodging webpage, I started checking for cheaper alternatives in Lenzerheide and around. On, I found several local hotels and studios from 100€ to 200€ per night for two or three guests, with breakfast included. The offer on airbnb was quite limited but I still managed to secure a small chalet at about 50€ per person and per night. There are more opportunities in nearby villages, for instance Tiefencastel, 11km away with a 19mn bus connection. Chur is 18km away with a slower 39mn bus connection, but with a very wide range of offers. Savognin, near the pricey Sankt Moritz is 20km away, with other cheap alternatives. Which may even make renting a car worth the expense if split between 3 or 4. Note also that low-cost airlines fly to Zürich from major European cities. For instance, Easyjet is currently offering a round trip from London for 72€…

MCMskv, Lenzerheide, 4-7 Jan., 2016 [news #2]

Posted in Mountains, pictures, Statistics, Travel, University life with tags , , , , , , , , , , , , on September 7, 2015 by xi'an

moonriseA quick reminder that the early bird registration deadline for BayesComp MCMski V is drawing near. And reminding Og’s readers that there will be a “Breaking news” session to highlight major advances among poster submissions. For which they can apply when sending the poster template. In addition, there is only a limited number of hotel rooms at the Schweizerhof, the main conference hotel and the first 40 participants who will make a reservation there will get a free one-day skipass!

SMC 2015

Posted in Statistics, Travel, University life with tags , , , , , , , , , , on September 7, 2015 by xi'an

Nicolas Chopin ran a workshop at ENSAE on sequential Monte Carlo the past three days and it was a good opportunity to get a much needed up-to-date on the current trends in the field. Especially given that the meeting was literally downstairs from my office at CREST. And given the top range of researchers presenting their current or past work (in the very amphitheatre where I attended my first statistics lectures, a few dozen years ago!). Since unforeseen events made me miss most of the central day, I will not comment on individual talks, some of which I had already heard in the recent past, but this was a high quality workshop, topped by a superb organisation. (I started wondering why there was no a single female speaker in the program and so few female participants in the audience, then realised this is a field with a massive gender imbalance, which is difficult to explain given the different situation in Bayesian statistics and even in Bayesian computation…)  Some key topics I gathered during the talks I could attend–apologies to the other speakers for missing their talk due to those unforeseen events–are unbiasedness, which sounds central to the SMC methods [at least those presented there] as opposed to MCMC algorithms, and local features, used in different ways like hierarchical decomposition, multiscale, parallelisation, local coupling, &tc., to improve convergence and efficiency…

JSM 2015 [day #2]

Posted in Books, R, Statistics, Travel, University life with tags , , , , , , , , , , , , , on August 11, 2015 by xi'an

Today, at JSM 2015, in Seattle, I attended several Bayesian sessions, having sadly missed the Dennis Lindley memorial session yesterday, as it clashed with my own session. In the morning sessions on Bayesian model choice, David Rossell (Warwick) defended non-local priors à la Johnson (& Rossell) as having better frequentist properties. Although I appreciate the concept of eliminating a neighbourhood of the null in the alternative prior, even from a Bayesian viewpoint since it forces us to declare explicitly when the null is no longer acceptable, I find the asymptotic motivation for the prior less commendable and open to arbitrary choices that may lead to huge variations in the numerical value of the Bayes factor. Another talk by Jin Wang merged spike and slab with EM with bootstrap with random forests in variable selection. But I could not fathom what the intended properties of the method were… Besides returning another type of MAP.

The second Bayesian session of the morn was mostly centred on sparsity and penalisation, with Carlos Carvalho and Rob McCulloch discussing a two step method that goes through a standard posterior  construction on the saturated model, before using a utility function to select the pertinent variables. Separation of utility from prior was a novel concept for me, if not for Jay Kadane who objected to Rob a few years ago that he put in the prior what should be in the utility… New for me because I always considered the product prior x utility as the main brick in building the Bayesian edifice… Following Herman Rubin’s motto! Veronika Rocková linked with this post-LASSO perspective by studying spike & slab priors based on Laplace priors. While Veronicka’s goal was to achieve sparsity and consistency, this modelling made me wonder at the potential equivalent in our mixtures for testing approach. I concluded that having a mixture of two priors could be translated in a mixture over the sample with two different parameters, each with a different prior. A different topic, namely multiple testing, was treated by Jim Berger, who showed convincingly in my opinion that a Bayesian approach provides a significant advantage.

In the afternoon finalists of the ISBA Savage Award presented their PhD work, both in the theory and  methods section and in the application section. Besides Veronicka Rocková’s work on a Bayesian approach to factor analysis, with a remarkable resolution via a non-parametric Indian buffet prior and a variable selection interpretation that avoids MCMC difficulties, Vinayak Rao wrote his thesis on MCMC methods for jump processes with a finite number of observations, using a highly convincing completion scheme that created independence between blocks and which reminded me of the Papaspiliopoulos et al. (2005) trick for continuous time processes. I do wonder at the potential impact of this method for processing the coalescent trees in population genetics. Two talks dealt with inference on graphical models, Masanao Yajima and  Christine Peterson, inferring the structure of a sparse graph by Bayesian methods.  With applications in protein networks. And with again a spike & slab prior in Christine’s work. The last talk by Sayantan Banerjee was connected to most others in this Savage session in that it also dealt with sparsity. When estimating a large covariance matrix. (It is always interesting to try to spot tendencies in awards and conferences. Following the Bayesian non-parametric era, are we now entering the Bayesian sparsity era? We will see if this is the case at ISBA 2016!) And the winner is..?! We will know tomorrow night! In the meanwhile, congrats to my friends Sudipto Banerjee, Igor Prünster, Sylvia Richardson, and Judith Rousseau who got nominated IMS Fellows tonight.

JSM 2015 [day #1]

Posted in Books, R, Statistics, Travel, University life with tags , , , , , , , , , , , , , , , on August 10, 2015 by xi'an

ferryThis afternoon, at JSM 2015, in Seattle, we had the Bayesian Computation I and II sessions that Omiros Papaspiliopoulos and myself put together (sponsored by IMS and ISBA). Despite this being Sunday and hence having some of the participants still arriving, the sessions went on well in terms of audience. Thanks to Mark Girolami’s strict presidency, we were so much on time in Bayesian Computation I that we had 20mn left for a floor discussion that turned into a speakers’ discussion! All talks were of obvious interest for MCMCists, but Ryan Adams’ presentation on firefly Monte Carlo got me thinking for most of the afternoon on different ways of exploiting the existence of a bound on the terms composing the target. With little to show by the end of the afternoon! On the mundane side, I was sorry to miss Pierre Jacob, who was still in France due to difficulties in obtaining a working visa for Harvard (!), and surprised to see Dawn Woodard wearing a Uber tee-shirt, until she told us she was now working at Uber! Which a posteriori makes sense, given her work on traffic predictions!


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