Archive for Benjamini

It’s the selection’s fault not the p-values’… [seminar]

Posted in pictures, Statistics, University life with tags , , , , , , on February 5, 2016 by xi'an

Paris and la Seine, from Pont du Garigliano, Oct. 20, 2011Yoav Benjamini will give a seminar talk in Paris next Monday on the above (full title: “The replicability crisis in science: It’s the selection’s fault not the p-values’“). (That I will miss for being in Warwick at the time.) With a fairly terse abstract:

I shall discuss the problem of lack of replicability of results in science, and point at selective inference as a statistical root cause. I shall then present a few strategies for addressing selective inference, and their application in genomics, brain research and earlier phases of clinical trials where both primary and secondary endpoints are being used.

Details: February 8, 2016, 16h, Université Pierre & Marie Curie, campus Jussieu, salle 15-16-101.

reading classics (#4,5,6)

Posted in Books, Kids, Statistics, University life with tags , , , , , , , , , , , , , , on December 9, 2013 by xi'an

La Défense from Paris-Dauphine, Nov. 15, 2012This week, thanks to a lack of clear instructions (from me) to my students in the Reading Classics student seminar, four students showed up with a presentation! Since I had planned for two teaching blocks, three of them managed to fit within the three hours, while the last one nicely accepted to wait till next week to present a paper by David Cox…

The first paper discussed therein was A new look at the statistical model identification, written in 1974 by Hirotugu Akaike. And presenting the AIC criterion. My student Rozan asked to give the presentation in French as he struggled with English, but it was still a challenge for him and he ended up being too close to the paper to provide a proper perspective on why AIC is written the way it is and why it is (potentially) relevant for model selection. And why it is not such a definitive answer to the model selection problem. This is not the simplest paper in the list, to be sure, but some intuition could have been built from the linear model, rather than producing the case of an ARMA(p,q) model without much explanation. (I actually wonder why the penalty for this model is (p+q)/T, rather than (p+q+1)/T for the additional variance parameter.) Or simulation ran on the performances of AIC versus other xIC’s…

The second paper was another classic, the original GLM paper by John Nelder and his coauthor Wedderburn, published in 1972 in Series B. A slightly easier paper, in that the notion of a generalised linear model is presented therein, with mathematical properties linking the (conditional) mean of the observation with the parameters and several examples that could be discussed. Plus having the book as a backup. My student Ysé did a reasonable job in presenting the concepts, but she would have benefited from this extra-week in including properly the computations she ran in R around the glm() function… (The definition of the deviance was somehow deficient, although this led to a small discussion during the class as to how the analysis of deviance was extending the then flourishing analysis of variance.) In the generic definition of the generalised linear models, I was also reminded of the
generality of the nuisance parameter modelling, which made the part of interest appear as an exponential shift on the original (nuisance) density.

The third paper, presented by Bong, was yet another classic, namely the FDR paper, Controlling the false discovery rate, of Benjamini and Hochberg in Series B (which was recently promoted to the should-have-been-a-Read-Paper category by the RSS Research Committee and discussed at the Annual RSS Conference in Edinburgh four years ago, as well as published in Series B). This 2010 discussion would actually have been a good start to discuss the paper in class, but Bong was not aware of it and mentioned earlier papers extending the 1995 classic. She gave a decent presentation of the problem and of the solution of Benjamini and Hochberg but I wonder how much of the novelty of the concept the class grasped. (I presume everyone was getting tired by then as I was the only one asking questions.) The slides somewhat made it look too much like a simulation experiment… (Unsurprisingly, the presentation did not include any Bayesian perspective on the approach, even though they are quite natural and emerged very quickly once the paper was published. I remember for instance the Valencia 7 meeting in Teneriffe where Larry Wasserman discussed about the Bayesian-frequentist agreement in multiple testing.)