Archive for Doing Bayesian Data Analysis

ghost [parameters] in the [Bayesian] shell

Posted in Books, Kids, Statistics with tags , , , , , , , on August 3, 2017 by xi'an

This question appeared on Stack Exchange (X Validated) two days ago. And the equalities indeed seem to suffer from several mathematical inconsistencies, as I pointed out in my Answer. However, what I find most crucial in this question is that the quantity on the left hand side is meaningless. Parameters for different models only make sense within their own model. Hence when comparing models parameters cannot co-exist across models. What I suspect [without direct access to Kruschke’s Doing Bayesian Data Analysis book and as was later confirmed by John] is that he is using pseudo-priors in order to apply Carlin and Chib (1995) resolution [by saturation of the parameter space] of simulating over a trans-dimensional space…

John Kruschke on Bayesian assessment of null values

Posted in Books, Kids, pictures, Statistics, University life with tags , , , , , , , , on February 28, 2017 by xi'an

John Kruschke pointed out to me a blog entry he wrote last December as a follow-up to my own entry on an earlier paper of his. Induced by an X validated entry. Just in case this sounds a wee bit too convoluted for unraveling the threads (!), the central notion there is to replace a point null hypothesis testing [of bad reputation, for many good reasons] with a check whether or not the null value stands within the 95% HPD region [modulo a buffer zone], which offers the pluses of avoiding a Dirac mass at the null value and a long-term impact of the prior tails on the decision, as well as the possibility of a no-decision, with the minuses of replacing the null with a tolerance region around the null and calibrating both the rejection level and the buffer zone. The December blog entry exposes this principle with graphical illustrations familiar to readers of Doing Bayesian Data Analysis.

As I do not want to fall into an infinite regress of mirror discussions, I will not proceed further than referring to my earlier post, which covers my reservations about the proposal. But interested readers may want to check the latest paper by Kruschke and Liddel on that perspective. (With the conclusion that “Bayesian estimation does everything the New Statistics desires, better”.) Available on PsyArXiv, an avatar of arXiv for psychology papers.