Kate Lee pointed me to a rather surprising inefficiency in matlab, exploited in Sylvia Früwirth-Schnatter’s bayesf package: running a gamma simulation by rgamma(n,a,b) takes longer and sometimes much longer than rgamma(n,a,1)/b, the latter taking advantage of the scale nature of b. I wanted to check on my own whether or not R faced the same difficulty, so I ran an experiment [while stuck in a Thalys train at Brussels, between Amsterdam and Paris…] Using different values for a [click on the graph] and a range of values of b. To no visible difference between both implementations, at least when using system.time for checking.
a=seq(.1,4,le=25) for (t in 1:25) a[t]=system.time( rgamma(10^7,.3,a[t])) a=a/system.time(rgamma(10^7,.3,1))
Once arrived home, I wondered about the relevance of the above comparison, since rgamma(10^7,.3,1) forces R to use 1 as a scale, which may differ from using rgamma(10^7,.3), where 1 is known to be the scale [does this sentence make sense?!]. So I rerun an even bigger experiment as
a=seq(.1,4,le=25) for (t in 1:25) a[t]=system.time( rgamma(10^8,.3,a[t])) a=a/system.time(rgamma(10^7,.3))
and got the graph below. Which is much more interesting because it shows that some values of a are leading to a loss of efficiency of 50%. Indeed. (The most extreme cases correspond to a=0.3, 1.1., 5.8. No clear pattern emerging.)
A silly LaTeX error took me a few minutes too many to solve: I defined
which got me the error message
TeX capacity exceeded , sorry [ grouping levels =255].
that I understood as a recursive definition. So I instead pre-defined the new θ as
which did not work either… After google-ing the issue, I found this on-line LaTeX Wikibook that provided me with the solution:
which worked. Of course, a global change of \theta into \btheta would have been much much faster to execute….
Things are starting to get in place for the next ISBA 2016 World meeting, in Forte Village Resort Convention Center, Sardinia, Italy. June 13-17, 2016. And not only the logo inspired from the nuraghe below. I am sure the program will be terrific and make this new occurrence of a “Valencia meeting” worth attending. Just like the previous occurrences, e.g. Cancún last summer and Kyoto in 2012.
However, and not for the first time, I wonder at the sustainability of such meetings when faced with always increasing—or more accurately sky-rocketing!—registration fees… We have now reached €500 per participant for the sole (early reg.) fees, excluding lodging, food or transportation. If we bet on 500 participants, this means simply renting the convention centre would cost €250,000 for the four or five days of the meeting. This sounds enormous, even accounting for the processing costs of the congress organiser. (By comparison, renting the convention centre MCMSki in Chamonix for three days was less than €20,000.) Given the likely high costs of staying at the resort, it is very unlikely I will be able to support my PhD students As I know very well of the difficulty to find dedicated volunteers willing to offer a large fraction of their time towards the success of behemoth meetings, this comment is by no means aimed at my friends from Cagliari who kindly accepted to organise this meeting. But rather at the general state of academic meetings which costs makes them out of reach for a large part of the scientific community.
Thus, this makes me wonder anew whether we should move to a novel conference model given that the fantastic growth of the Bayesian community makes the ideal of gathering together in a single beach hotel for a week of discussions, talks, posters, and more discussions unattainable. If truly physical meetings are to perdure—and this notion is as debatable as the one about the survival of paper versions of the journals—, a new approach would be to find a few universities or sponsors able to provide one or several amphitheatres around the World and to connect all those places by teleconference. Reducing the audience size at each location would greatly the pressure to find a few huge and pricey convention centres, while dispersing the units all around would diminish travel costs as well. There could be more parallel sessions and ways could be found to share virtual poster sessions, e.g. by having avatars presenting some else’s poster. Time could be reserved for local discussions of presented papers, to be summarised later to the other locations. And so on… Obviously, something would be lost of the old camaraderie, sharing research questions and side stories, as well as gossips and wine, with friends from all over the World. And discovering new parts of the World. But the cost of meetings is already preventing some of those friends to show up. I thus think it is time we reinvent the Valencia meetings into the next generation. And move to the Valenci-e-meetings.